CupSodaSimulator, a wrapper for the cupSODA GPU-based ODE integrator. No special Python libraries are necessary since cupSODA comes as a standalone binary, but if PyCUDA is installed then PySB can auto-detect the configuration details of your GPU. See the documentation in pysb.simulator.CupSodaSimulator for more.
Brand new Simulator classes and SimulationResult classes in the
pysb.simulator package. The old pysb.integrate API is unchanged but has been
reimplemented using the Simulator class.
Model import from other types of models in the pysb.importers package.
Currently supports BNGL and SBML model import.
PySB has officially adopted semantic versioning. This means v1.1.0 includes new features as compared to v1.0.x, but is still backwards compatible so you won't have to change any of your models to upgrade to it.
Full Python 3 compatibility. All tests pass under Python …