PySB v1.14.0 Released

New features

  • Energy modeling by @jmuhlich in #553 This adds support for BNG's energy modeling formalism. Models can now contain EnergyPatterns as well as energy-based Rules with the Arrhenius rate law parameterized by activation energy (E₀) and rate distribution (φ). Energy-based models can be simulated directly in PySB or exported to BNGL for use with BioNetGen-based tools.
  • Add total_rate option to rules for NFsim compatibility by @rasi in #559


Bug fixes

  • Fix repr() of single-monomer complexes with compartments by @alubbock in #550